rs6226516 SNP Detail

Summary

• ID
  rs6226516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42298231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CCCAAAGGAG
  TGAGGGCTTC TTGGGTTTCT TTTAGCACTC GGGTTCTGAT TGCCCTGATG TCTGCTGGTN
  ACACTGGACT CAAACCCTGT TGGTCCATAG CGGCCAAATC TATGCCAGGA CGCTATAGAC
  CTTCCCACCT GAATAGCCCA TTCAGGTAGT TATGCCCATC TCCAATTTCC TCTACCAAAG
  GGGGAAAAAA AGAAAAAGAA AAAGAAAAAG AAAAAAGTCC AGTTCTACAA AAATATTGCC
  R
  TCCTATCTCC CTGAGGGGCT CTGGTATTAG TTTGTTCTAA GTAGCTCATG ATTTAGAATA
  CAAAGGCATT TCCAGAGTGC ATGTTTAACA AAATGACATA GCAGATAATT GAAATTTATT
  TGCAATTTTC AAACTACAAT AAACACAATT CTCCTTTTCT TTCATTAATA ATCGCACGGC
  TAATGCATAG CAATCCCTCT GCAGCTTTTA CAAGCAAACT TGAGCTGCCG TGCTGTAATA
  GCTGGAAAAG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8632224	WI_WGS_1_42774242	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6226516					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42298231 () rs orientation: forward

Symbol	Name	Function Class
Gm28175	predicted gene 28175	within coordinates
Gm70195	predicted gene, 70195	24 bp downstream
Rr406833	regulatory region 406833	528 bp distal
Rr410203	regulatory region 410203	102 bp distal
Rr410204	regulatory region 410204	224 bp proximal
Rr410205	regulatory region 410205	745 bp proximal
Tssr6506	transcription start site region 6506	732 bp upstream