rs6227608 SNP Detail

Summary

• ID
  rs6227608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3956598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAAAAC ACTTTTGTTC
  CTGTTTGGCT GGGACCTGCA AGTCTGCAGC ACTGAGAGAG TGCTCTTCTG AAGGAGTTGG
  TCTTAGGCTC CACCCACATA GTCTAGCTTT CTGCCTGCAG ATCCCAGCAG GGGGCCTTAG
  CTGCTAAGTT ATTGACATCC TTCTACCTGA AAGTTGCTCC CCCTGAAAGA GTCCCAGGCT
  Y
  GGAAGACTTG AGGGGCAAGC TAGCCACAGC TGCTGCCTCT AGTCCTGTTA GCCTGAATAG
  ACCAAGAACA CCCAAGTGCC CTCTTAGTGA GAAGGGAAGC AGGGGTCAGT CAGCCATTTC
  CTCAGCAAAT GATGGTGACT CATTCCTCTG CCTCTTCATC TTCTAGTTCA GCAAAGTGAG
  GACCATTACC ACCAGGTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8633317	WI_WGS_12_3772220	WI	MOUSE	f	SNP							T		C
ss61337431	NES16942746	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6227608					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337431	NES16942746	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3956598 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3a	DNA methyltransferase 3A	within coordinates
Tssr112533	transcription start site region 112533	1245 bp downstream
Tssr112534	transcription start site region 112534	210 bp upstream
Tssr112535	transcription start site region 112535	1004 bp upstream
Tssr112536	transcription start site region 112536	1075 bp upstream
Tssr112537	transcription start site region 112537	1148 bp upstream
Tssr112538	transcription start site region 112538	1622 bp upstream
Tssr115622	transcription start site region 115622	1237 bp downstream