rs6227687 SNP Detail

Summary

• ID
  rs6227687
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3956655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGCTCTT CTGAAGGAGT
  TGGTCTTAGG CTCCACCCAC ATAGTCTAGC TTTCTGCCTG CAGATCCCAG CAGGGGGCCT
  TAGCTGCTAA GTTATTGACA TCCTTCTACC TGAAAGTTGC TCCCCCTGAA AGAGTCCCAG
  GCTTGGAAGA CTTGAGGGGC AAGCTAGCCA CAGCTGCTGC CTCTAGTCCT GTTAGCCTGA
  W
  TAGACCAAGA ACACCCAAGT GCCCTCTTAG TGAGAAGGGA AGCAGGGGTC AGTCAGCCAT
  TTCCTCAGCA AATGATGGTG ACTCATTCCT CTGCCTCTTC ATCTTCTAGT TCAGCAAAGT
  GAGGACCATT ACCACCAGGT CAAACTCTAT AAAGCAGGGC AAAGACCAGC ATTTCCCCGT
  CTTCATGAAC GAGAAGGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8633396	WI_WGS_12_3772277	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6227687					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3956655 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3a	DNA methyltransferase 3A	within coordinates
Tssr112533	transcription start site region 112533	1302 bp downstream
Tssr112534	transcription start site region 112534	153 bp upstream
Tssr112535	transcription start site region 112535	947 bp upstream
Tssr112536	transcription start site region 112536	1018 bp upstream
Tssr112537	transcription start site region 112537	1091 bp upstream
Tssr112538	transcription start site region 112538	1565 bp upstream
Tssr115622	transcription start site region 115622	1180 bp downstream