rs6227853 SNP Detail

Summary

• ID
  rs6227853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84513232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGATGTAA TTTTATTAAG
  GCTTAGATGA AATACCACAA GAGGGAACAC ACTTTCTACC AGCATTTAAG TGATGAATAC
  ATACAAACCT TGAAACATGT ATAAGTCCAT AATCTAAATC GACGCAGCAG GCGTCCCTGG
  AACACGCCAC CTCCTCAGCT ATCATCCCAC CCTAACCACC CACACAACCC AGACGTGGCC
  R
  GCAGGCTGGG TCTTCCCGGA TGCCCAACTC TACTAGCTGA CCTCTTGGCA TCACAGATGG
  ATTATTCCTG ACCAACATTT CCAGTCATTC CAAAAATTCT TGGAGTATGA GTTAAGGCTG
  GGTGTGTTTG GAGTGGAGAG TAAGTAATGA GGAAGTTTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss8633562	WI_WGS_16_85341375	WI	MOUSE	f	SNP		A	G
ss60500098	NES16522424	PERLEGEN	MM_PANEL2	f	SNP	A			A	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs6227853					SNP	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500098	NES16522424	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84513232 () rs orientation: forward

Symbol	Name	Function Class
Mir155hg	Mir155 host gene (non-protein coding)	1099 bp downstream
Mrpl39	mitochondrial ribosomal protein L39	1836 bp downstream
Rr518522	regulatory region 518522	1998 bp distal
Rr518523	regulatory region 518523	149 bp distal
Tssr139174	transcription start site region 139174	1356 bp downstream
Tssr139175	transcription start site region 139175	1257 bp downstream
Tssr139176	transcription start site region 139176	724 bp downstream