rs6228042 SNP Detail

Summary

• ID
  rs6228042
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:39628318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGATAA CTTGAAAACT
  TTGTTTTCTA AAACCTAAAA TCCATCAGTG AACGTTTAGT TGCCTCACCT TAGAATAAAG
  GTCTAACATT TTTATGAGTG CTATTTCATT TTTCCTGGGT GGTATATTCT CACAGTGTAT
  TGGGACTAAT GCCAGTATCT ATATAGGGTA ATGTTGAACA AGCTCTGTAA CTCACTATAC
  S
  TTAGTTATGA CCACTTGTAA AGTGAGAATA AAATAATAGC AACTTAAATT ACAAAGATTA
  ATCAAGTTTG CTATATATGA AGTATATTAA TTCATGAGGC ATATTATATA CTCAATTATC
  ATTAAGAACT ATTAGTCATT TAATTTCAAA TTCCCCTAAT AATTATTAGT CATTTTAATG
  TCAAATTTCT CTGGTTCTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8633753	WI_WGS_18_39693502	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6228042					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:39628318 () rs orientation: forward

Symbol	Name	Function Class
Nr3c1	nuclear receptor subfamily 3, group C, member 1	within coordinates
Tssr150833	transcription start site region 150833	1468 bp upstream
Tssr150834	transcription start site region 150834	1484 bp upstream
Tssr153089	transcription start site region 153089	1320 bp downstream