rs6228105 SNP Detail

Summary

• ID
  rs6228105
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:100182221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTAATCCAAC
  CCGGTCTGCT TCCAAAGCCC ACGCTCTCAA TAACACCCCA CGTGCCTGTC TGAGGCTGAG
  CTAAACAGTT AAGTTGGGGA AAATAAAAGC GGTCAGGCTT GATTCTGCTA TCTTGAACAC
  AAATATCTTG GCGTCACGGA CACACAAGCA CCATCTGCCT GTAGGTGTGC CGATGGTGGG
  AGCCACTCTA TCTGATGCAA AATTGAGCAC CGTCAGCTGT TTGACAGACA AAACACTCCG
  M
  GCAGTGCTTC CNACTGGCTG TTGTGCACAC CGCCATGGCT TTAGCTGCTC CACAATAATC
  CCCAAACTCT GAATTTGCAA CACCCCAGGG TATTTCTAGT CACTATAAGG GATTTTGAAA
  GAGTCTTAAA ATTTCTCAAA AACAAATTAG TGTCAGTGAA CTTTAAGAAG TAAAGAGGCT
  CTACACCAGG CCTTCCAGGG TCACAGAAAA GCAGTATCCT GAAATCCANC CAGGAGAAGC
  CCCTCCAGTG                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8633816	WI_WGS_9_100830903	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6228105					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:100182221 () rs orientation: forward

Symbol	Name	Function Class
Gm28167	predicted gene 28167	within coordinates
Rr685479	regulatory region 685479	1449 bp proximal
Rr685480	regulatory region 685480	1575 bp proximal