rs6228126 SNP Detail

Summary

• ID
  rs6228126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:100182233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGTCTGCTTC
  CAAAGCCCAC GCTCTCAATA ACACCCCACG TGCCTGTCTG AGGCTGAGCT AAACAGTTAA
  GTTGGGGAAA ATAAAAGCGG TCAGGCTTGA TTCTGCTATC TTGAACACAA ATATCTTGGC
  GTCACGGACA CACAAGCACC ATCTGCCTGT AGGTGTGCCG ATGGTGGGAG CCACTCTATC
  TGATGCAAAA TTGAGCACCG TCAGCTGTTT GACAGACAAA ACACTCCGNG CAGTGCTTCC
  Y
  ACTGGCTGTT GTGCACACCG CCATGGCTTT AGCTGCTCCA CAATAATCCC CAAACTCTGA
  ATTTGCAACA CCCCAGGGTA TTTCTAGTCA CTATAAGGGA TTTTGAAAGA GTCTTAAAAT
  TTCTCAAAAA CAAATTAGTG TCAGTGAACT TTAAGAAGTA AAGAGGCTCT ACACCAGGCC
  TTCCAGGGTC ACAGAAAAGC AGTATCCTGA AATCCANCCA GGAGAAGCCC CTCCAGTGGG
  CAGGAGGAAG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8633837	WI_WGS_9_100830915	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6228126					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:100182233 () rs orientation: forward

Symbol	Name	Function Class
Gm28167	predicted gene 28167	within coordinates
Rr685479	regulatory region 685479	1437 bp proximal
Rr685480	regulatory region 685480	1563 bp proximal