rs6228205 SNP Detail

Summary

• ID
  rs6228205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:3956740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAAGTTAT TGACATCCTT
  CTACCTGAAA GTTGCTCCCC CTGAAAGAGT CCCAGGCTTG GAAGACTTGA GGGGCAAGCT
  AGCCACAGCT GCTGCCTCTA GTCCTGTTAG CCTGAATAGA CCAAGAACAC CCAAGTGCCC
  TCTTAGTGAG AAGGGAAGCA GGGGTCAGTC AGCCATTTCC TCAGCAAATG ATGGTGACTC
  R
  TTCCTCTGCC TCTTCATCTT CTAGTTCAGC AAAGTGAGGA CCATTACCAC CAGGTCAAAC
  TCTATAAAGC AGGGCAAAGA CCAGCATTTC CCCGTCTTCA TGAACGAGAA GGAGGACATC
  CTGTGGTGCA CTGAAATGGA AAGGTAGAGT GCTGGGTGCT TGCGTCTGGC CAGGGCTGGG
  TTAAAAGGAA GGCGGCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8633916	WI_WGS_12_3772362	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6228205					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3956740 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3a	DNA methyltransferase 3A	Intron
Tssr112533	transcription start site region 112533	1387 bp downstream
Tssr112534	transcription start site region 112534	68 bp upstream
Tssr112535	transcription start site region 112535	862 bp upstream
Tssr112536	transcription start site region 112536	933 bp upstream
Tssr112537	transcription start site region 112537	1006 bp upstream
Tssr112538	transcription start site region 112538	1480 bp upstream
Tssr115622	transcription start site region 115622	1095 bp downstream