rs6228221 SNP Detail

Summary

• ID
  rs6228221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3956753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCTTCTA CCTGAAAGTT
  GCTCCCCCTG AAAGAGTCCC AGGCTTGGAA GACTTGAGGG GCAAGCTAGC CACAGCTGCT
  GCCTCTAGTC CTGTTAGCCT GAATAGACCA AGAACACCCA AGTGCCCTCT TAGTGAGAAG
  GGAAGCAGGG GTCAGTCAGC CATTTCCTCA GCAAATGATG GTGACTCATT CCTCTGCCTC
  Y
  TCATCTTCTA GTTCAGCAAA GTGAGGACCA TTACCACCAG GTCAAACTCT ATAAAGCAGG
  GCAAAGACCA GCATTTCCCC GTCTTCATGA ACGAGAAGGA GGACATCCTG TGGTGCACTG
  AAATGGAAAG GTAGAGTGCT GGGTGCTTGC GTCTGGCCAG GGCTGGGTTA AAAGGAAGGC
  GGCAGGCTCC TCATTTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8633932	WI_WGS_12_3772375	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6228221					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3956753 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3a	DNA methyltransferase 3A	within coordinates
Tssr112533	transcription start site region 112533	1400 bp downstream
Tssr112534	transcription start site region 112534	55 bp upstream
Tssr112535	transcription start site region 112535	849 bp upstream
Tssr112536	transcription start site region 112536	920 bp upstream
Tssr112537	transcription start site region 112537	993 bp upstream
Tssr112538	transcription start site region 112538	1467 bp upstream
Tssr115622	transcription start site region 115622	1082 bp downstream