rs6228439 SNP Detail

Summary

• ID
  rs6228439
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127221383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAACACAT GACTCACCCA
  AAGTCACCGA GCCAGAGTGC AGTGGCACAC AATGACCCTT TACTGTGAGT CAGGGACTCA
  ATATGCAGAT TCTCACTTAA CACTTCATCA GGGTATCCTT AAGTGGATCC TGCTCCCCTC
  CCAATTTATA GATGGAGAAT CTGATAATCA AACGACAGTG ACGGGCAAGG CACAGAGAGC
  W
  CACAATAAGT GATAAATGCT GGTGACTCAT TACTGCAGGG TGCAGGAAGC CAGGCACTCG
  CTGCTGAAGA GATTGGACTT AGGTCCATGT ACTCCTCCAC CTCCCATCCC TTCCCGAGGC
  CCACCCAGAC CACGGGGATG GGGGTGGGGT GTTTCCCCAC CTCTTTTCTT TTCAGACAGC
  ATCTCAGACT AGCTTTGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8634150	WI_WGS_4_124718308	WI	MOUSE	f	SNP					T		A
ss37729547	NES09190599	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T		T		T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6228439					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37729547	NES09190599	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127221383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14847	CpG island 14847	876 bp distal
Gjb3	gap junction protein, beta 3	within coordinates
Gm40251	predicted gene, 40251	1773 bp upstream
Tssr43417	transcription start site region 43417	1344 bp upstream
Tssr43418	transcription start site region 43418	1508 bp downstream