rs6228456 SNP Detail

Summary

• ID
  rs6228456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127221388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGACTC ACCCAAAGTC
  ACCGAGCCAG AGTGCAGTGG CACACAATGA CCCTTTACTG TGAGTCAGGG ACTCAATATG
  CAGATTCTCA CTTAACACTT CATCAGGGTA TCCTTAAGTG GATCCTGCTC CCCTCCCAAT
  TTATAGATGG AGAATCTGAT AATCAAACGA CAGTGACGGG CAAGGCACAG AGAGCTCACA
  R
  TAAGTGATAA ATGCTGGTGA CTCATTACTG CAGGGTGCAG GAAGCCAGGC ACTCGCTGCT
  GAAGAGATTG GACTTAGGTC CATGTACTCC TCCACCTCCC ATCCCTTCCC GAGGCCCACC
  CAGACCACGG GGATGGGGGT GGGGTGTTTC CCCACCTCTT TTCTTTTCAG ACAGCATCTC
  AGACTAGCTT TGAGCTATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8634167	WI_WGS_4_124718313	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6228456					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127221388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14847	CpG island 14847	881 bp distal
Gjb3	gap junction protein, beta 3	within coordinates
Gm40251	predicted gene, 40251	1768 bp upstream
Rr599858	regulatory region 599858	within coordinates
Rr599859	regulatory region 599859	1428 bp proximal
Rr599860	regulatory region 599860	1556 bp proximal
Tssr43417	transcription start site region 43417	1349 bp upstream
Tssr43418	transcription start site region 43418	1503 bp downstream