rs6228551 SNP Detail

Summary

• ID
  rs6228551
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155095153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAAAAGG ACCAGGTGCC CAGGCAAAAG AAAGACAGCA
  TGAGAAATGA TATGTGGACA CGGGAGAAGA CAGGGACACA GGAAAAGAGA GGGACATGGG
  R
  GAAGGTGTGG TATGTGCTAG TCAGGGGTAG AGGCTCAGGC ATTTGTGCTC CTGAGAGACA
  ATGTTTTTCT TTTAGTTTGT TTTTCCCCCA GTTTTTGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8634263	WI_WGS_1_156169804	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6228551					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155095153 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
Rr420977	regulatory region 420977			1345 bp distal
Rr420978	regulatory region 420978			1008 bp distal
Rr420979	regulatory region 420979			139 bp distal