rs6228552 SNP Detail

Summary

• ID
  rs6228552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127221443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGTGAGT CAGGGACTCA
  ATATGCAGAT TCTCACTTAA CACTTCATCA GGGTATCCTT AAGTGGATCC TGCTCCCCTC
  CCAATTTATA GATGGAGAAT CTGATAATCA AACGACAGTG ACGGGCAAGG CACAGAGAGC
  TCACAATAAG TGATAAATGC TGGTGACTCA TTACTGCAGG GTGCAGGAAG CCAGGCACTC
  R
  CTGCTGAAGA GATTGGACTT AGGTCCATGT ACTCCTCCAC CTCCCATCCC TTCCCGAGGC
  CCACCCAGAC CACGGGGATG GGGGTGGGGT GTTTCCCCAC CTCTTTTCTT TTCAGACAGC
  ATCTCAGACT AGCTTTGAGC TATGTGGCCC AGGAGAACCC CGAAATTCTA ACCCTCCATT
  CTTTTCTTCC TGAGTGCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8634264	WI_WGS_4_124718368	WI	MOUSE	f	SNP						G		A
ss37729546	NES09190600	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		G		G	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6228552					SNP	G	G	G	G	G	G	G	A	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37729546	NES09190600	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127221443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14847	CpG island 14847	936 bp distal
Gjb3	gap junction protein, beta 3	within coordinates
Gm40251	predicted gene, 40251	1713 bp upstream
Tssr43417	transcription start site region 43417	1404 bp upstream
Tssr43418	transcription start site region 43418	1448 bp downstream