rs6229038 SNP Detail

Summary

• ID
  rs6229038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79658443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGCCGGG AAACCAGGCA
  GAGGCTCAGT TCCGGCTTTG TAGGGCCAAG GCCTGCAGCG GGCACGGTGC CCGCCCTCGT
  CAGCCTGAGT ATCGTTTTTC TGTCTTCTCT GGACTTTGTT TCCCAGGTCC GGGTGGGGAC
  TGAGAGGAGG GGCCCACCTG CTCCTGGGTG GGGCCTCTGT CCCCTTAGCA ACATGTGGCC
  R
  GGGCGGAGCC CGGGGGCCTT TCCTGCAGAG GACAGAGCCT GAGGCTGGGA GGTGGCCTGG
  GCACCTGGAG CTGGCAGGTG AGGCGGGGGA CGCTGGGAGT CCCGGAAGCT GGGAGTCTGG
  AGCCGGGTAA GGTGAGGCAC GTGCAGAAGG AGAAGGGGTC TGTTTGTGGT GTGCCTACTG
  GCAGGGTTGG TAGGCCTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8634751	WI_WGS_10_80280026	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6229038					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79658443 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Palm	paralemmin	1713 bp downstream
Rr216662	regulatory region 216662	1443 bp distal
Rr225117	regulatory region 225117	within coordinates
Tssr94402	transcription start site region 94402	1580 bp downstream
Tssr94403	transcription start site region 94403	8 bp upstream
Tssr94404	transcription start site region 94404	1979 bp upstream