rs6229347 SNP Detail

Summary

• ID
  rs6229347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55377162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTGCTGATGA
  ACTTGAATGT CGAGATGTTG ATGAAAGGAA CACTAGCGTT GAATGcactt atgcacacat
  atgtgcacac acactcatac acacatacac acTGCATGCA AAGAAGCTCC ACAAGGCTCT
  TGTCCATGAA TTGGCAGGGA TTTGATGGAT AAAATTCCTG TGTGTTATAA TAACCATGGT
  AATTTTTGGT CCAGTTGTTC TGCTGTGATG CAGGATCTGA GGAATTCTTC ATACAGAAAG
  Y
  TAAAAATCAT ATCTCCCATA TCCTGTGTTA TATATTATTG CTTGGTTATT TCTCTTATTT
  TCCTTTGTCA GCAGTTGTAC CAATTTCAGT GCCGTAGTTG ATGTTTCTGA GGCTGTACTG
  TGATAGAATT ATTGGTGGTA GAATGATAAT TTCAGGAATT GTATTGTCCG TGTCTTTGAT
  TTGGGTGTAA CACTAATATT TATGGATTTG GTGATGCAAC CGAGCTTGCA AGCAGATGGC
  TCCGAAGGAC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8635062	WI_WGS_19_55403158	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6229347					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55377162 () rs orientation: forward

Symbol	Name	Function Class
D19Mit35	DNA segment, Chr 19, Massachusetts Institute of Technology 35	995 bp distal
Vti1a	vesicle transport through interaction with t-SNAREs 1A	within coordinates