rs6229609 SNP Detail

Summary

• ID
  rs6229609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127221602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTGACTC ATTACTGCAG
  GGTGCAGGAA GCCAGGCACT CGCTGCTGAA GAGATTGGAC TTAGGTCCAT GTACTCCTCC
  ACCTCCCATC CCTTCCCGAG GCCCACCCAG ACCACGGGGA TGGGGGTGGG GTGTTTCCCC
  ACCTCTTTTC TTTTCAGACA GCATCTCAGA CTAGCTTTGA GCTATGTGGC CCAGGAGAAC
  Y
  CCGAAATTCT AACCCTCCAT TCTTTTCTTC CTGAGTGCTA GTATTACGAG AGTGTATCAC
  CATGTCCAGT TTTATGCCAT ATTGAGGCTG GAAGCCCAGG CTCTGGGCAT TCTACCCAAG
  TACTGAGTTA CATTCTGAGC CACAAGCCAC GGTTTTTGAA AATTACTTCC TCATTGATGT
  CGCAACAGCA TCCTGCAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8635325	WI_WGS_4_124718527	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6229609					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127221602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14847	CpG island 14847	1095 bp distal
Gjb3	gap junction protein, beta 3	within coordinates
Gm40251	predicted gene, 40251	1554 bp upstream
Tssr43417	transcription start site region 43417	1563 bp upstream
Tssr43418	transcription start site region 43418	1289 bp downstream