rs6229641 SNP Detail

Summary

• ID
  rs6229641
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79658558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTCCCA GGTCCGGGTG
  GGGACTGAGA GGAGGGGCCC ACCTGCTCCT GGGTGGGGCC TCTGTCCCCT TAGCAACATG
  TGGCCGGGGC GGAGCCCGGG GGCCTTTCCT GCAGAGGACA GAGCCTGAGG CTGGGAGGTG
  GCCTGGGCAC CTGGAGCTGG CAGGTGAGGC GGGGGACGCT GGGAGTCCCG GAAGCTGGGA
  K
  TCTGGAGCCG GGTAAGGTGA GGCACGTGCA GAAGGAGAAG GGGTCTGTTT GTGGTGTGCC
  TACTGGCAGG GTTGGTAGGC CTCCAGGGGG CCACAGGAAT CCCTTTCCTC GTCTGTATTT
  CGCCACTCTT GGCCCCGGCT GGGCCCCCCC CCCCCCGTTG TCCCCCTGGA TATCAGAGCC
  TGCTCTGTCA TCCACTAACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8635357	WI_WGS_10_80280141	WI	MOUSE	f	SNP							G		T
ss52386591	NES15268669	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		T		G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6229641					SNP	G	G	G	G	G	G	G	T	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386591	NES15268669	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79658558 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Palm	paralemmin	1828 bp downstream
Tssr94402	transcription start site region 94402	1695 bp downstream
Tssr94403	transcription start site region 94403	45 bp downstream
Tssr94404	transcription start site region 94404	1864 bp upstream
Tssr94405	transcription start site region 94405	1949 bp upstream
Tssr94406	transcription start site region 94406	1980 bp upstream