rs6229650 SNP Detail

Summary

• ID
  rs6229650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127221622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCAGGAA GCCAGGCACT
  CGCTGCTGAA GAGATTGGAC TTAGGTCCAT GTACTCCTCC ACCTCCCATC CCTTCCCGAG
  GCCCACCCAG ACCACGGGGA TGGGGGTGGG GTGTTTCCCC ACCTCTTTTC TTTTCAGACA
  GCATCTCAGA CTAGCTTTGA GCTATGTGGC CCAGGAGAAC CCCGAAATTC TAACCCTCCA
  Y
  TCTTTTCTTC CTGAGTGCTA GTATTACGAG AGTGTATCAC CATGTCCAGT TTTATGCCAT
  ATTGAGGCTG GAAGCCCAGG CTCTGGGCAT TCTACCCAAG TACTGAGTTA CATTCTGAGC
  CACAAGCCAC GGTTTTTGAA AATTACTTCC TCATTGATGT CGCAACAGCA TCCTGCAAAC
  TTGGGGGTTG TGAGCCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8635366	WI_WGS_4_124718547	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6229650					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127221622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14847	CpG island 14847	1115 bp distal
Gjb3	gap junction protein, beta 3	within coordinates
Gm40251	predicted gene, 40251	1534 bp upstream
Tssr43417	transcription start site region 43417	1583 bp upstream
Tssr43418	transcription start site region 43418	1269 bp downstream