rs6229689 SNP Detail

Summary

• ID
  rs6229689
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105073696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACCGAGG AGCCCGTCTC
  TCAAGATTAC ACTCCCGAGG CCTCACATTC AAAATTGGCT GTGCTGGCTT GGCACTGCTG
  AGCTAGCGTG GTAGGGCACG TTGACAAGCC TTCCTTCTCC CCTTTCTGTC CTTGAGCCCC
  TTTAACCTCA CTGCCCCCAC CGAAGCACAC ATCAAACGGA GCCAATCACT ACAGCCAATC
  M
  TGTGGCAGCA TGGGGGTGGG GTGGGACTTT CTGTTACTAA CAGGGACAGA TAAAACCACA
  GCAGGCTGGA CCACCAGCCC CAAACCTGCA CTGCATTGAG ATGACTTTCA GGAACCTTTT
  ATTCAAGAAG TTTCCCTCCT CACTGTGAAA TAGGGAGAAA CCTAGCTAGC CAAGTCTTCC
  ATTAGAGGTC TGAGGCCTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8635405	WI_WGS_8_104229409	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6229689					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105073696 () rs orientation: forward

Symbol	Name	Function Class
Cmtm3	CKLF-like MARVEL transmembrane domain containing 3	within coordinates
Cmtm4	CKLF-like MARVEL transmembrane domain containing 4	1127 bp downstream
Rr668667	regulatory region 668667	1995 bp proximal
Tssr79058	transcription start site region 79058	1771 bp downstream
Tssr79059	transcription start site region 79059	69 bp downstream
Tssr79060	transcription start site region 79060	395 bp upstream