rs6229747 SNP Detail

Summary

• ID
  rs6229747
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:105073726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCGAGG CCTCACATTC
  AAAATTGGCT GTGCTGGCTT GGCACTGCTG AGCTAGCGTG GTAGGGCACG TTGACAAGCC
  TTCCTTCTCC CCTTTCTGTC CTTGAGCCCC TTTAACCTCA CTGCCCCCAC CGAAGCACAC
  ATCAAACGGA GCCAATCACT ACAGCCAATC ATGTGGCAGC ATGGGGGTGG GGTGGGACTT
  Y
  CTGTTACTAA CAGGGACAGA TAAAACCACA GCAGGCTGGA CCACCAGCCC CAAACCTGCA
  CTGCATTGAG ATGACTTTCA GGAACCTTTT ATTCAAGAAG TTTCCCTCCT CACTGTGAAA
  TAGGGAGAAA CCTAGCTAGC CAAGTCTTCC ATTAGAGGTC TGAGGCCTTT TCAGAAACGG
  ACCCAAAGAT TTGTTTACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8635463	WI_WGS_8_104229439	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6229747					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105073726 () rs orientation: forward

Symbol	Name	Function Class
Cmtm3	CKLF-like MARVEL transmembrane domain containing 3	mRNA-UTR
Cmtm4	CKLF-like MARVEL transmembrane domain containing 4	1097 bp downstream
Rr668667	regulatory region 668667	1965 bp proximal
Tssr79058	transcription start site region 79058	1801 bp downstream
Tssr79059	transcription start site region 79059	99 bp downstream
Tssr79060	transcription start site region 79060	365 bp upstream