rs6230085 SNP Detail

Summary

• ID
  rs6230085
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:81538557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTACTAGA CTTTCTGAGT
  CTGAAGTAAA CTGCCAGGTT TGGTAACAAA ACAGCTGTAC ATCTGGAACA AGTTTATCAT
  CTTTAACCAT TGACTTATTT CACCTATAAA ACTGGAACGA CTCAAACTGC CTTGTAGTTT
  TGAGAGTTTA ATACTGGGAA AGTGCAGTAG AATACAGTAT CTAGCACCTA GAAAGTAGAG
  S
  CAGTAGTGTG TTCTGATTAT GATGAAGACT CTGAAGCCAG ACTGCATGGC TTTAAACTTA
  AGCTGACATT AAGTAACTGT GTGACCTGGG CAAGTTTCTT AACCTGTCTA TGCCTTGTTC
  ATCTCATTGT AAAACGGACA TAACAGCTTC TCTAAGAGTT TTGTGAGCCT AAAGTGAAAT
  GTTAAGGGCT TAGGATAATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8635802	WI_WGS_12_76200490	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6230085					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:81538557 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm28370	predicted gene 28370			416 bp upstream
S2bpcox16	synaptojanin 2 binding protein Cox16 readthrough			Intron
				Noncoding-Transcript-Variant