rs6230172 SNP Detail

Summary

• ID
  rs6230172
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79658635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGCCGG GGCGGAGCCC
  GGGGGCCTTT CCTGCAGAGG ACAGAGCCTG AGGCTGGGAG GTGGCCTGGG CACCTGGAGC
  TGGCAGGTGA GGCGGGGGAC GCTGGGAGTC CCGGAAGCTG GGAGTCTGGA GCCGGGTAAG
  GTGAGGCACG TGCAGAAGGA GAAGGGGTCT GTTTGTGGTG TGCCTACTGG CAGGGTTGGT
  W
  GGCCTCCAGG GGGCCACAGG AATCCCTTTC CTCGTCTGTA TTTCGCCACT CTTGGCCCCG
  GCTGGGCCCC CCCCCCCCCG TTGTCCCCCT GGATATCAGA GCCTGCTCTG TCATCCACTA
  ACCCAAAAGA AAACCTGAGC CTGCTGTGGA TAAGGCTTCC ATTCGTACCT AAATGCCAGA
  ACACCAAAAC CTAGTTCACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8635889	WI_WGS_10_80280218	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6230172					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79658635 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Palm	paralemmin	1905 bp downstream
Rr216662	regulatory region 216662	1635 bp distal
Rr225117	regulatory region 225117	within coordinates
Tssr94402	transcription start site region 94402	1772 bp downstream
Tssr94403	transcription start site region 94403	122 bp downstream
Tssr94404	transcription start site region 94404	1787 bp upstream
Tssr94405	transcription start site region 94405	1872 bp upstream
Tssr94406	transcription start site region 94406	1903 bp upstream