rs6230236 SNP Detail

Summary

• ID
  rs6230236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79658676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCCTGA GGCTGGGAGG
  TGGCCTGGGC ACCTGGAGCT GGCAGGTGAG GCGGGGGACG CTGGGAGTCC CGGAAGCTGG
  GAGTCTGGAG CCGGGTAAGG TGAGGCACGT GCAGAAGGAG AAGGGGTCTG TTTGTGGTGT
  GCCTACTGGC AGGGTTGGTA GGCCTCCAGG GGGCCACAGG AATCCCTTTC CTCGTCTGTA
  Y
  TTCGCCACTC TTGGCCCCGG CTGGGCCCCC CCCCCCCCGT TGTCCCCCTG GATATCAGAG
  CCTGCTCTGT CATCCACTAA CCCAAAAGAA AACCTGAGCC TGCTGTGGAT AAGGCTTCCA
  TTCGTACCTA AATGCCAGAA CACCAAAACC TAGTTCACTG AGAAAGAGGC TGGAACCAAA
  GACCCTGGGC TGGTCTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8635953	WI_WGS_10_80280259	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6230236					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79658676 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Palm	paralemmin	1946 bp downstream
Rr216662	regulatory region 216662	1676 bp distal
Rr225117	regulatory region 225117	within coordinates
Tssr94402	transcription start site region 94402	1813 bp downstream
Tssr94403	transcription start site region 94403	163 bp downstream
Tssr94404	transcription start site region 94404	1746 bp upstream
Tssr94405	transcription start site region 94405	1831 bp upstream
Tssr94406	transcription start site region 94406	1862 bp upstream