rs6230252 SNP Detail

Summary

• ID
  rs6230252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79658680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGAGGCT GGGAGGTGGC
  CTGGGCACCT GGAGCTGGCA GGTGAGGCGG GGGACGCTGG GAGTCCCGGA AGCTGGGAGT
  CTGGAGCCGG GTAAGGTGAG GCACGTGCAG AAGGAGAAGG GGTCTGTTTG TGGTGTGCCT
  ACTGGCAGGG TTGGTAGGCC TCCAGGGGGC CACAGGAATC CCTTTCCTCG TCTGTATTTC
  R
  CCACTCTTGG CCCCGGCTGG GCCCCCCCCC CCCCGTTGTC CCCCTGGATA TCAGAGCCTG
  CTCTGTCATC CACTAACCCA AAAGAAAACC TGAGCCTGCT GTGGATAAGG CTTCCATTCG
  TACCTAAATG CCAGAACACC AAAACCTAGT TCACTGAGAA AGAGGCTGGA ACCAAAGACC
  CTGGGCTGGT CTGTGAGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8635969	WI_WGS_10_80280263	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6230252					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79658680 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Palm	paralemmin	1950 bp downstream
Rr216662	regulatory region 216662	1680 bp distal
Rr225117	regulatory region 225117	within coordinates
Tssr94402	transcription start site region 94402	1817 bp downstream
Tssr94403	transcription start site region 94403	167 bp downstream
Tssr94404	transcription start site region 94404	1742 bp upstream
Tssr94405	transcription start site region 94405	1827 bp upstream
Tssr94406	transcription start site region 94406	1858 bp upstream