rs6230270 SNP Detail

Summary

• ID
  rs6230270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79658694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGCCTGG GCACCTGGAG
  CTGGCAGGTG AGGCGGGGGA CGCTGGGAGT CCCGGAAGCT GGGAGTCTGG AGCCGGGTAA
  GGTGAGGCAC GTGCAGAAGG AGAAGGGGTC TGTTTGTGGT GTGCCTACTG GCAGGGTTGG
  TAGGCCTCCA GGGGGCCACA GGAATCCCTT TCCTCGTCTG TATTTCGCCA CTCTTGGCCC
  Y
  GGCTGGGCCC CCCCCCCCCC GTTGTCCCCC TGGATATCAG AGCCTGCTCT GTCATCCACT
  AACCCAAAAG AAAACCTGAG CCTGCTGTGG ATAAGGCTTC CATTCGTACC TAAATGCCAG
  AACACCAAAA CCTAGTTCAC TGAGAAAGAG GCTGGAACCA AAGACCCTGG GCTGGTCTGT
  GAGGCCCCAT GGATTCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8635987	WI_WGS_10_80280277	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6230270					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79658694 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Palm	paralemmin	1964 bp downstream
Tssr94402	transcription start site region 94402	1831 bp downstream
Tssr94403	transcription start site region 94403	181 bp downstream
Tssr94404	transcription start site region 94404	1728 bp upstream
Tssr94405	transcription start site region 94405	1813 bp upstream
Tssr94406	transcription start site region 94406	1844 bp upstream