rs6230431 SNP Detail

Summary

• ID
  rs6230431
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12567107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACAGTTAGAC
  ACAGTGTTGC CAAGACCCTA CTTAGAAAGC GTAAAGGAAT ACACAAACCT TGGGTTGAGA
  AGGATAGGTC AATAGGCTCT AGGCATTATG AGAACATCAG AATGTCTGGA CCCCAAGTAA
  TACAAAGACT ACATCAATCA GAACAGGATA TAAAGAGACC TTAGGAATAG GATACTAAAC
  AGTATAAGGA ACACAGCAGA ATTCTTTGTT GTTCTGAGCT GTCTAGAGAG TTACAAACAT
  W
  CCCAATTATG GTCAGAGGCA GACTTCAAGT TCCCCCTGAN CTAATCTGCC ATTAGGAACA
  AACCTAGTCA CAGGTTAGCT AATAACTGGC ATTACCAGAA CCCACAGCCT CTCAATGTGT
  ACCATACAAA TCAGCCCCTG TGTGtaacca acaagctcag tcagtcagca gggtctcaag
  ggagggagtg aagattgaaa agaaaaagac aattagacaa cattataaca ngactcaagc
  ccctgctgag                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8636148	WI_WGS_7_8946402	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6230431					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12567107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18318	CpG island 18318	1371 bp proximal
Rr642383	regulatory region 642383	1091 bp proximal
Rr642384	regulatory region 642384	1745 bp proximal
Rr642385	regulatory region 642385	1813 bp proximal
Tssr64479	transcription start site region 64479	1563 bp upstream
Tssr64480	transcription start site region 64480	1793 bp upstream
Zfp110	zinc finger protein 110	1581 bp upstream