rs6230517 SNP Detail

Summary

• ID
  rs6230517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12567147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC AGACTTCAAG TTCCCCCTGA
  Y
  CTAATCTGCC ATTAGGAACA AACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8636234	WI_WGS_7_8946442	WI	MOUSE	f	SNP			T	C
ss46000339	mCV23047059	ABI	CRAMUS_MOUSE	f	SNP	C	C	T		C
ss148340633	ENSMUSSNP4754707	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C
ss322106491	CHEV_7_13418569	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6230517					SNP	C	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12567147 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18318	CpG island 18318	1331 bp proximal
Rr642383	regulatory region 642383	1051 bp proximal
Rr642384	regulatory region 642384	1705 bp proximal
Rr642385	regulatory region 642385	1773 bp proximal
Tssr64479	transcription start site region 64479	1523 bp upstream
Tssr64480	transcription start site region 64480	1753 bp upstream
Zfp110	zinc finger protein 110	1541 bp upstream