rs6230625 SNP Detail

Summary

• ID
  rs6230625
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:81538625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTTTATC ATCTTTAACC
  ATTGACTTAT TTCACCTATA AAACTGGAAC GACTCAAACT GCCTTGTAGT TTTGAGAGTT
  TAATACTGGG AAAGTGCAGT AGAATACAGT ATCTAGCACC TAGAAAGTAG AGGCAGTAGT
  GTGTTCTGAT TATGATGAAG ACTCTGAAGC CAGACTGCAT GGCTTTAAAC TTAAGCTGAC
  W
  TTAAGTAACT GTGTGACCTG GGCAAGTTTC TTAACCTGTC TATGCCTTGT TCATCTCATT
  GTAAAACGGA CATAACAGCT TCTCTAAGAG TTTTGTGAGC CTAAAGTGAA ATGTTAAGGG
  CTTAGGATAA TAACTAGGAC CCTGGTCAGC ACTCAGGAAT TGTTAGAAAT TCTATGATAG
  TGCTGAGTCC TAGTGTTGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8636342	WI_WGS_12_76200558	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6230625					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:81538625 () rs orientation: forward

Symbol	Name	Function Class
Gm28370	predicted gene 28370	348 bp upstream
S2bpcox16	synaptojanin 2 binding protein Cox16 readthrough	within coordinates