rs6230651 SNP Detail

Summary

• ID
  rs6230651
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72344545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAATAAT GGTGCTACAG
  ATATTGCTCT GCCAGAGTGG GGCTGGGGAG ATGGCTCAAC GGTTTGGAGC GCCGCCTATT
  CCTGCAGATT ACCCGGAGTT TGGGAACCAG CACCCACATG ACAGCTCCAG TAACCTACCT
  CCAGGAATTT CTAACTCCAG TTCTAGGGGA GCTGATAACA TCTTCTGGTC TTTGTGGGCA
  Y
  CAGGCACATA ATGGCGCATA GACACTTTAT TTACGTAAAG TTAAATCTCA AAAAGTTCTT
  AAGAAAAAAA GATAAAGTAT GATTGTGAAA ACACGTAGAG TCTTTAACAA TGTTGATTTC
  ACAGAAACTG TAAGCAGATT GGTGATGACA GGGGCTAGGG CAGGGGGAAA TGGCGAAGGG
  CTAGACTGCA GTTAGCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8636368	WI_WGS_9_73074000	WI	MOUSE	f	SNP								T		C
ss50742798	NES14240583	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T		T	T	T	T		T	T	C	T
ss136620978	ENSMUSSNP3684770	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T								T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6230651					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50742798	NES14240583	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72344545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	755 bp proximal
Mns1	meiosis-specific nuclear structural protein 1	731 bp upstream
Rr401506	regulatory region 401506	1115 bp upstream
Rr682742	regulatory region 682742	782 bp proximal
Rr682743	regulatory region 682743	1283 bp proximal
Tssr85997	transcription start site region 85997	722 bp upstream
Tssr85998	transcription start site region 85998	1256 bp upstream
Tssr85999	transcription start site region 85999	1271 bp upstream
Tssr86000	transcription start site region 86000	1316 bp upstream
Tssr86001	transcription start site region 86001	1346 bp upstream
Tssr86002	transcription start site region 86002	1580 bp upstream