rs6230777 SNP Detail

Summary

• ID
  rs6230777
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64204548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT TGCTGTATTA TTGTCTTTTG
  M
  GACAGGGTCT TATTATGTGT TGAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	LG/J	SM/J
ss8636494	WI_WGS_13_62881282	WI	MOUSE	f	SNP		A	C
ss149158423	ENSMUSSNP50004	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss324378681	CHEV_13_64158042	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	LG/J	SM/J
rs6230777					SNP	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64204548 () rs orientation: forward

Symbol	Name	Function Class
Gm30999	predicted gene, 30999	within coordinates
Hsd17b3	hydroxysteroid (17-beta) dehydrogenase 3	1532 bp downstream
Rr273309	regulatory region 273309	853 bp proximal
Rr388579	regulatory region 388579	1696 bp downstream