rs6230817 SNP Detail

Summary

• ID
  rs6230817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127221799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCCGAAA TTCTAACCCT
  CCATTCTTTT CTTCCTGAGT GCTAGTATTA CGAGAGTGTA TCACCATGTC CAGTTTTATG
  CCATATTGAG GCTGGAAGCC CAGGCTCTGG GCATTCTACC CAAGTACTGA GTTACATTCT
  GAGCCACAAG CCACGGTTTT TGAAAATTAC TTCCTCATTG ATGTCGCAAC AGCATCCTGC
  R
  AACTTGGGGG TTGTGAGCCC CAGGAGACTG AGACTAGAGA AGACCTGTTA ACTGGTTTTT
  TGTTTGTTTG TTTTAATTTT AATTTTATGT GCATGAGTTT TGCCTGCATG CATTTCTATG
  CTCCGCATGT GTGCCTGGCG TCGGTGGAGG CAGGAGTTGG GTGTCAGGTC CCCTGGAACT
  ACAGTTACAG AGGGTTGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8636534	WI_WGS_4_124718724	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6230817					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127221799 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14847	CpG island 14847	1292 bp distal
Gjb3	gap junction protein, beta 3	within coordinates
Gm40251	predicted gene, 40251	1357 bp upstream
Tssr43417	transcription start site region 43417	1760 bp upstream
Tssr43418	transcription start site region 43418	1092 bp downstream