rs6230841 SNP Detail

Summary

• ID
  rs6230841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79658758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGGAGCC GGGTAAGGTG
  AGGCACGTGC AGAAGGAGAA GGGGTCTGTT TGTGGTGTGC CTACTGGCAG GGTTGGTAGG
  CCTCCAGGGG GCCACAGGAA TCCCTTTCCT CGTCTGTATT TCGCCACTCT TGGCCCCGGC
  TGGGCCCCCC CCCCCCCGTT GTCCCCCTGG ATATCAGAGC CTGCTCTGTC ATCCACTAAC
  Y
  CAAAAGAAAA CCTGAGCCTG CTGTGGATAA GGCTTCCATT CGTACCTAAA TGCCAGAACA
  CCAAAACCTA GTTCACTGAG AAAGAGGCTG GAACCAAAGA CCCTGGGCTG GTCTGTGAGG
  CCCCATGGAT TCAGGGCCTG ATTTGAAGAA ACCAGCGGTG CCATGCCTGG CTGTTCAGGC
  TTGGGCTTGT CCAGGGTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8636558	WI_WGS_10_80280341	WI	MOUSE	f	SNP							C		T
ss52386588	NES15268670	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6230841					SNP	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386588	NES15268670	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79658758 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Rr216662	regulatory region 216662	1758 bp distal
Rr225117	regulatory region 225117	within coordinates
Tssr94402	transcription start site region 94402	1895 bp downstream
Tssr94403	transcription start site region 94403	245 bp downstream
Tssr94404	transcription start site region 94404	1664 bp upstream
Tssr94405	transcription start site region 94405	1749 bp upstream
Tssr94406	transcription start site region 94406	1780 bp upstream