rs6231290 SNP Detail

Summary

• ID
  rs6231290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64204605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTCAGCCACA
  GGACATATAA GAACATAATC ATTCAGAAGA CTCTAGCTTA GGGCAGAACG TATCACCTCC
  ATGTCCCCAC ATCTTAAGAA TTGGAGACCC AGAAGATCTC ATTTCTACTG TTCCCATCGT
  CTGCATTAGA GAATTCATTT TTGTTTATTT TGTTGACTTC TTTTGCTGTA TTATTGTCTT
  TTGNGACAGG GTCTTATTAT GTGTTGAGAC ATGGTCCAAG GATGAAGCTG TGTGAGATTT
  Y
  TGAGAGCTTG TGAGAAAGCT TCAAGAAAAC AGAATCTTGC GCCTTCTGTG CCTTCTGAAC
  AAGGGTTTGT TCTAGGAATA TNCTTTTGTG CCCCTCCCAG GTATAATAAA TAGAAGTGGG
  TTTGCTGTGG AATACCCGTT GCTACTACTT GTGTTGTTCA AAAAATGTTT CCACCCACAA
  GTTGTCCCTG TGGCCATATA TAGTTTGAAC TCACGTGAAC TTTGCTCATA TGACCTTGAT
  AACCCTCAGA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss8637009	WI_WGS_13_62881339	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs6231290					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64204605 () rs orientation: forward

Symbol	Name	Function Class
Gm30999	predicted gene, 30999	within coordinates
Hsd17b3	hydroxysteroid (17-beta) dehydrogenase 3	1475 bp downstream
Rr273309	regulatory region 273309	796 bp proximal
Rr388579	regulatory region 388579	1753 bp downstream