rs6231471 SNP Detail

Summary

• ID
  rs6231471
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44058267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGACTGAGG GCGGCCTTGA
  TCGCAGGCAC TCGGAGGACC GCGACCCCCG AGCCTCGCCT CACCGGTCAG TGACGCATCG
  CCCCCGCCCG CACGTGCAGC CGCCACCCGG CCCCGCCAAC TGCTGCCAAC AGCCGGCCCC
  GCCCACCTGC CCGGTACTGC GGCTGCGCGG GGACGCAGGC GACGCAGCCC CCGCCCGCGA
  S
  TCGCGAGACG GTGCGCGGGC GGGACAAAAT TGGCCCCGGG TGCGCGCACA GTGTAGTGAT
  TCTAAGTGCC CAGACGAGGA CCAAGTCTCC TGGGGTGGGT CACTCGGACA GACGCTGGTT
  GAGGCATGCT AGTGCACAGG ACCAGCCCCT CAGTGTAGGA GTTGTTCCTG CATCCTTTTG
  TGGTTCGTCC CTAGTCCAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8637190	WI_WGS_19_43963110	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6231471					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44058267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	within coordinates
Erlin1	ER lipid raft associated 1	43 bp upstream
Gm59010	predicted gene, 59010	32 bp upstream
Rr548150	regulatory region 548150	within coordinates
Rr548151	regulatory region 548151	43 bp proximal
Rr548152	regulatory region 548152	649 bp proximal
Tssr159429	transcription start site region 159429	406 bp upstream
Tssr159430	transcription start site region 159430	153 bp upstream
Tssr159431	transcription start site region 159431	120 bp upstream
Tssr159432	transcription start site region 159432	41 bp upstream