rs6231540 SNP Detail

Summary

• ID
  rs6231540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105074030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCTCAC TGTGAAATAG
  GGAGAAACCT AGCTAGCCAA GTCTTCCATT AGAGGTCTGA GGCCTTTTCA GAAACGGACC
  CAAAGATTTG TTTACTAGGG CCCAGAGACA GGGAGCCAAC CAGTATAGTG GCAGTGACCA
  AGTCACAAGT GGCTGGGCAG GCCCAGCCAA GCACTCTCTT CCTGGGGACC CTAAAAGACA
  R
  AGTGCTTCCT CTGGACACCT GGGCAGGACC ACTGGTGACA TGGACTTCTC TGTAGTCCCT
  TGGGGGCGGT TACTGTGTGT GTCTTTGATG GTGTTTTCTA ACTTTTTTAT ATTTTTTTAA
  TACAAAAACA ATGTAACAAA TGGTCTTTTC TGTAACCTAA GAGGCCCCAT GAATAAGGGC
  CCATGTCTTG GGCATTTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8637259	WI_WGS_8_104229743	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6231540					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105074030 () rs orientation: forward

Symbol	Name	Function Class
Cmtm3	CKLF-like MARVEL transmembrane domain containing 3	within coordinates
Cmtm4	CKLF-like MARVEL transmembrane domain containing 4	793 bp downstream
Rr668667	regulatory region 668667	1661 bp proximal
Tssr79059	transcription start site region 79059	403 bp downstream
Tssr79060	transcription start site region 79060	61 bp upstream