rs6231541 SNP Detail

Summary

• ID
  rs6231541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44058308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCACCTGCC CGGTACTGCG GCTGCGCGGG GACGCAGGCG
  ACGCAGCCCC CGCCCGCGAC TCGCGAGACG GTGCGCGGGC GGGACAAAAT TGGCCCCGGG
  Y
  GCGCGCACAG TGTAGTGATT CTAAGTGCCC AGACGAGGAC CAAGTCTCCT GGGGTGGGTC
  ACTCGGACAG ACGCTGGTTG AGGCATGCTA GTGCACAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
ss8637260	WI_WGS_19_43963151	WI	MOUSE	f	SNP			T	C
ss146433153	ENSMUSSNP2129669	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
rs6231541					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44058308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	within coordinates
Erlin1	ER lipid raft associated 1	84 bp upstream
Gm59010	predicted gene, 59010	within coordinates
Rr548150	regulatory region 548150	within coordinates
Rr548151	regulatory region 548151	2 bp proximal
Rr548152	regulatory region 548152	608 bp proximal
Tssr159429	transcription start site region 159429	447 bp upstream
Tssr159430	transcription start site region 159430	194 bp upstream
Tssr159431	transcription start site region 159431	161 bp upstream
Tssr159432	transcription start site region 159432	82 bp upstream