rs6231669 SNP Detail

Summary

• ID
  rs6231669
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12567338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCTGAT CTAATCTGCC
  ATTAGGAACA AACCTAGTCA CAGGTTAGCT AATAACTGGC ATTACCAGAA CCCACAGCCT
  CTCAATGTGT ACCATACAAA TCAGCCCCTG TGTGTAACCA ACAAGCTCAG TCAGTCAGCA
  GGGTCTCAAG GGAGGGAGTG AAGATTGAAA AGAAAAAGAC AATTAGACAA CATTATAACA
  S
  GACTCAAGCC CCTGCTGAGC CTGAAGTGGG TTTATTTTTC TCTAGTCTGT TTTTTCTAGT
  CTATTCTAAG TACATGCAAA GAATAAGGTC AGTTCTAAGT CAAGGTACAA ACAAGGCAAT
  AAACAAAGTC CTGTGGTATT CAGGGACTTA CAAAACGATC AAGATCTTGA TCTTAGCCCC
  AAGTCAAATT CTTGCCTGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8637388	WI_WGS_7_8946633	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6231669					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12567338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18318	CpG island 18318	1140 bp proximal
Rr642383	regulatory region 642383	860 bp proximal
Rr642384	regulatory region 642384	1514 bp proximal
Rr642385	regulatory region 642385	1582 bp proximal
Tssr64479	transcription start site region 64479	1332 bp upstream
Tssr64480	transcription start site region 64480	1562 bp upstream
Tssr64481	transcription start site region 64481	1837 bp upstream
Zfp110	zinc finger protein 110	1350 bp upstream