rs6231729 SNP Detail

Summary

• ID
  rs6231729
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:77042619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAATTTA AAAAAAAATC
  AATGATAGAA CCAAAACAGA ACTAAAACTA AAACAGAAGA ATGGTGCTTT TAAGAATAGC
  TTCTCTGGGG CCCAACACTC GGCCCAGGAT AAGTCCGGTT TCTTCTGTGG AGGGTACACA
  GTTAAAGCCT TGATTTCCTG GATCTGGTAA CATGGCAAAA GATGTGTGGC GTCCCTTGTC
  R
  CCATCCACCG TTCCACAGTG AACACACTTG GAAAGCAGCT TTTGCCAAAA ACCTTCGGAC
  AGTCCAATGT CAATGTCACA CAGCAAGTGG TGATTGGCAC GCCTCACAGT CCTGCAGCAT
  CCAACACTAT TGTGGTAGGG AGCCCACACT CTCCCAACAC TCACTTTGTG TCCCAGAATC
  AGACGTCTGA CTCCTCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8637448	WI_WGS_1_77917721	WI	MOUSE	f	SNP								A	G
ss45197082	mCV23073657	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss60754647	NES16397697	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A			A	A	A	A	A	G	A
ss144722420	ENSMUSSNP2448762	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6231729					SNP	A	G	A	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60754647	NES16397697	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:77042619 () rs orientation: forward

Symbol	Name	Function Class
Gm70876	predicted gene, 70876	within coordinates
Tfdp1-ps	transcription factor Dp 1, pseudogene	within coordinates
Tssr7562	transcription start site region 7562	104 bp downstream