rs6231732 SNP Detail

Summary

• ID
  rs6231732
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:77042622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTAAAA AAAAATCAAT
  GATAGAACCA AAACAGAACT AAAACTAAAA CAGAAGAATG GTGCTTTTAA GAATAGCTTC
  TCTGGGGCCC AACACTCGGC CCAGGATAAG TCCGGTTTCT TCTGTGGAGG GTACACAGTT
  AAAGCCTTGA TTTCCTGGAT CTGGTAACAT GGCAAAAGAT GTGTGGCGTC CCTTGTCACC
  R
  TCCACCGTTC CACAGTGAAC ACACTTGGAA AGCAGCTTTT GCCAAAAACC TTCGGACAGT
  CCAATGTCAA TGTCACACAG CAAGTGGTGA TTGGCACGCC TCACAGTCCT GCAGCATCCA
  ACACTATTGT GGTAGGGAGC CCACACTCTC CCAACACTCA CTTTGTGTCC CAGAATCAGA
  CGTCTGACTC CTCACCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8637451	WI_WGS_1_77917724	WI	MOUSE	f	SNP			A	G
ss45011194	mCV23073658	ABI	CRAMUS_MOUSE	f	SNP	G	A	A		A
ss144722426	ENSMUSSNP2323942	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6231732					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:77042622 () rs orientation: forward

Symbol	Name	Function Class
Gm70876	predicted gene, 70876	within coordinates
Tfdp1-ps	transcription factor Dp 1, pseudogene	within coordinates
Tssr7562	transcription start site region 7562	107 bp downstream