rs6231796 SNP Detail

Summary

• ID
  rs6231796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:81538822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATTAAGT AACTGTGTGA
  CCTGGGCAAG TTTCTTAACC TGTCTATGCC TTGTTCATCT CATTGTAAAA CGGACATAAC
  AGCTTCTCTA AGAGTTTTGT GAGCCTAAAG TGAAATGTTA AGGGCTTAGG ATAATAACTA
  GGACCCTGGT CAGCACTCAG GAATTGTTAG AAATTCTATG ATAGTGCTGA GTCCTAGTGT
  Y
  GGCCTCTTGG GTAAAGTAAA CCTCAAAATT ATGTTTCTTT CCCCTTCCCA TTGTCCCATC
  AGAGATATTG GTTTATGAAG ATGACAGAAA AATAAGGAAA TACTTAATAG TCTTCTAAAG
  AAAAAAAAAT CCAAGACTGT AAACGTTCAA TAAGTTAAAC AGGTCTTTAT TGAGTGTCAT
  AGTTCAAGAG GCAAATCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8637515	WI_WGS_12_76200755	WI	MOUSE	f	SNP							T	C
ss47201742	NES11215903	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T			T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6231796					SNP	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47201742	NES11215903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:81538822 () rs orientation: forward

Symbol	Name	Function Class
Gm28370	predicted gene 28370	151 bp upstream
S2bpcox16	synaptojanin 2 binding protein Cox16 readthrough	within coordinates