rs6231867 SNP Detail

Summary

• ID
  rs6231867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139337139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CCGGAGGGGC
  TGCAGACTCC AGCCCTGATC ATCCTGACAG TCTCCTGTCC CANCCTGCCT GGCTTTTCTA
  CACCTACCTC CACATCCCAT NCATTGTCCC TGATGGCCAG GCAAATCTCA GCTCACCAGC
  TACCGTGCAG ACACCACAGC ACACCATCTG CCTTGACTTC CTCCTTTCCA ATACAAGCAA
  ACGGAGCCAC ACCAATCCTC CCCTGGGATT GTGACATCAG AGTCCTGTTG GTCCCTCTGC
  Y
  TCTGATTTcc atagccctcg ctcctggcca agtctggcac atagcaactg ctcaataagg
  atttcttgCA GCGATTATGT AGATTTTCCT GTCTGGGTAG GGGCCCTAGC TTGGATATTC
  TGTAAGTGGC CTTGGTGGCA GTTGGTTGAA ACATGACCCA GACATCCACA GTAGCGACAG
  GGAGCTGTCG CAGCCCAGGC TCACGCTGTT GCAGGGAAGA GAGGTGCTAG GGTGAATGCA
  GTCTAGGCTG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8637586	WI_WGS_5_138241071	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6231867					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139337139 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	1233 bp upstream
Tssr49499	transcription start site region 49499	1223 bp upstream