rs6232193 SNP Detail

Summary

• ID
  rs6232193
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:12567439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ATAACTGGCA
  TTACCAGAAC CCACAGCCTC TCAATGTGTA CCATACAAAT CAGCCCCTGT GTGtaaccaa
  caagctcagt cagtcagcag ggtctcaagg gagggagtga agattgaaaa gaaaaagaca
  attagacaac attataacan gactcaagcc cctgctgagc ctnaagtggg tttatttttc
  tctagtctgt tttttctagt ctattctaag tacatgcaaa gaataaggtc agttctaagt
  S
  aaggtacaaa caaggcaata aacaaagtcc tgtggtattc agggacttac aaaacgatca
  agatcttgat cttagcccca agtcaaattc ttgcctgagc ctacttccgt gtcctagcct
  aatgtcaaat tcctgcccaa ttcctagaag cagtcccaag agctctccac aTGTATGGAT
  ATTTACAGTT AGCATCCCTG GGACTGAGTG TAATTTTAGT TTTCCTCATA CATCTCTGAT
  CCTCCATGTC                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8637912	WI_WGS_7_8946734	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6232193					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12567439 () rs orientation: forward

Symbol	Name	Function Class
Rr642383	regulatory region 642383	759 bp proximal
Rr642384	regulatory region 642384	1413 bp proximal
Rr642385	regulatory region 642385	1481 bp proximal
Rr642386	regulatory region 642386	1982 bp proximal
Tssr64479	transcription start site region 64479	1231 bp upstream
Tssr64480	transcription start site region 64480	1461 bp upstream
Tssr64481	transcription start site region 64481	1736 bp upstream
Zfp110	zinc finger protein 110	mRNA-UTR