rs6232283 SNP Detail

Summary

• ID
  rs6232283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38705286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTTCAG GCTTACAAAG
  CTCACATGGC CTCCAAGAAG GCAGGCAGGG TGTAGCTTTT CCTGAAGATG CCAGACCACT
  TTAGTGAGCC CTGAGTAGCA ATTGATAAAA GCATCACTTT TTGGGCTAAA CAGAGGTGAT
  AGGCAATAAG GACAGCAGCT AGCAGCCAGG TCATGTCCCA AATCTGTCGC TGCAGGGTTA
  R
  GGCTTCTTGG ACCTCATCAG GACCTCATTT ATAGCCCCTC TGTAAAAGCA TTATCTACAG
  GGCCATCTCA TGGGATTGCT ATGAGGTCAA AAAAAGTCGC ATGTGTAAAG TCTCAGGCTA
  GTCCTTGGGA TGCAGTCAGT CCTTGTTATA AGTGGACCAT GAACTAAGGT TCTGCACATC
  AGAGGCTCCC ACTACATGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8638003	WI_WGS_5_37448958	WI	MOUSE	f	SNP							G		A
ss47699074	NES10240192	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6232283					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47699074	NES10240192	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38705286 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22249	predicted gene, 22249			1350 bp downstream
Rr610560	regulatory region 610560			135 bp distal
Rr610561	regulatory region 610561			1296 bp proximal
Tssr46062	transcription start site region 46062			1483 bp downstream
Tssr50811	transcription start site region 50811			1471 bp upstream
Wdr1	WD repeat domain 1			Intron
				Noncoding-Transcript-Variant