rs6232345 SNP Detail

Summary

• ID
  rs6232345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38705324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGGCAG GGTGTAGCTT
  TTCCTGAAGA TGCCAGACCA CTTTAGTGAG CCCTGAGTAG CAATTGATAA AAGCATCACT
  TTTTGGGCTA AACAGAGGTG ATAGGCAATA AGGACAGCAG CTAGCAGCCA GGTCATGTCC
  CAAATCTGTC GCTGCAGGGT TAGGGCTTCT TGGACCTCAT CAGGACCTCA TTTATAGCCC
  Y
  TCTGTAAAAG CATTATCTAC AGGGCCATCT CATGGGATTG CTATGAGGTC AAAAAAAGTC
  GCATGTGTAA AGTCTCAGGC TAGTCCTTGG GATGCAGTCA GTCCTTGTTA TAAGTGGACC
  ATGAACTAAG GTTCTGCACA TCAGAGGCTC CCACTACATG CAAACATGGG CCAATGTCTA
  CAGCAGTGGT TCTCAACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8638066	WI_WGS_5_37448996	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6232345					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38705324 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22249	predicted gene, 22249			1388 bp downstream
Rr610560	regulatory region 610560			173 bp distal
Rr610561	regulatory region 610561			1258 bp proximal
Tssr46062	transcription start site region 46062			1521 bp downstream
Tssr50811	transcription start site region 50811			1509 bp upstream
Wdr1	WD repeat domain 1			Intron
				Noncoding-Transcript-Variant