rs6233631 SNP Detail

Summary

• ID
  rs6233631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51341046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCGTTAA CGAATTTTTT
  TTTTTCTCTA GGTGTTTAGT GCCTGAGCAC CTGTAGGCTT GTGCTGCTCT GTAGCTGTTC
  TGGGTTAAGT CAAGTCTGGT GTGGGCCTTC CCCAGTTTAA TCTTTTTTTG TTTTTGTTTT
  TCTTTTTGTT TGTTTTTTCG AGACAGGGTT TCTCTGTGTA GCCCTGGCTG TCCTGGAACT
  Y
  ACTCTGTAGA CCAGGCTGGC CTCAAACTCA GAAATCCACC TGCCTCTGCC TCCCGTGTGC
  TGGGACTAAA GGTGTGCACC ACCACCGCCT GGCCCCCAGT TTAATCTTTA ACCAAAAATT
  CCTATGCACA TTTCTAAAAC TTGTGTCTGT CAACTTCTCT GTGATCCTTT CCAGAAAGAT
  TGTAGCCATT TTAGCCGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8639354	WI_WGS_3_51871085	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6233631					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51341046 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit			Intron
				Noncoding-Transcript-Variant
Rr576318	regulatory region 576318			459 bp proximal
Rr576319	regulatory region 576319			886 bp proximal
Rr576320	regulatory region 576320			1359 bp proximal