rs6233791 SNP Detail

Summary

• ID
  rs6233791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79950897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAAAAAT AATTAGATTA
  ACCACCCAAA AACACTGCAG CAGGTGAGTT GAGGCCAGCG GCGACGTCTT ACCCAGCCAC
  CTTTTTTGAT AACTGTTATT TAAAATTCTG TGTTGTGTGT GTGCGCGCGC GCGCCTACCA
  CGGAGTCCCT AGGTTCAGAG ACAGCCTGAG GGAGGCATTT CACTCTAGCC ACCTTGTGAA
  Y
  TTACGGGGAT CGAACTCATG AAGTCAGATT TGACGTCAAT CGCCCGCAAC CTCTGAGCCA
  TCTCACCAGC CCAGCTGCTC TTATTTTGCA CAGGAAACGC TCCTCTCTAT GCCATGGATC
  TCAGAGGCGC TACATTAAGG CTTCAGGTTC GGGAGTGTCG ACTTTGGGCT ACTTTTTGAC
  CTTTGACCCC TCCCCCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8639515	WI_WGS_10_80575154	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6233791					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79950897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1843	CpG island 1843	within coordinates
Gm67739	predicted gene, 67739	within coordinates
Rr216700	regulatory region 216700	297 bp distal
Rr225154	regulatory region 225154	within coordinates
Rr384985	regulatory region 384985	within coordinates
Stk11	serine/threonine kinase 11	740 bp upstream
Tssr94480	transcription start site region 94480	716 bp upstream
Tssr94481	transcription start site region 94481	800 bp upstream
Tssr94482	transcription start site region 94482	1170 bp upstream
Tssr94483	transcription start site region 94483	1204 bp upstream
Tssr94484	transcription start site region 94484	1316 bp upstream