rs6233795 SNP Detail

Summary

• ID
  rs6233795
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79950902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAATTA GATTAACCAC
  CCAAAAACAC TGCAGCAGGT GAGTTGAGGC CAGCGGCGAC GTCTTACCCA GCCACCTTTT
  TTGATAACTG TTATTTAAAA TTCTGTGTTG TGTGTGTGCG CGCGCGCGCC TACCACGGAG
  TCCCTAGGTT CAGAGACAGC CTGAGGGAGG CATTTCACTC TAGCCACCTT GTGAACTTAC
  S
  GGGATCGAAC TCATGAAGTC AGATTTGACG TCAATCGCCC GCAACCTCTG AGCCATCTCA
  CCAGCCCAGC TGCTCTTATT TTGCACAGGA AACGCTCCTC TCTATGCCAT GGATCTCAGA
  GGCGCTACAT TAAGGCTTCA GGTTCGGGAG TGTCGACTTT GGGCTACTTT TTGACCTTTG
  ACCCCTCCCC CAAGGCCGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8639519	WI_WGS_10_80575159	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6233795					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79950902 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1843	CpG island 1843	within coordinates
Gm67739	predicted gene, 67739	within coordinates
Rr216700	regulatory region 216700	302 bp distal
Rr225154	regulatory region 225154	within coordinates
Rr384985	regulatory region 384985	within coordinates
Stk11	serine/threonine kinase 11	735 bp upstream
Tssr94480	transcription start site region 94480	711 bp upstream
Tssr94481	transcription start site region 94481	795 bp upstream
Tssr94482	transcription start site region 94482	1165 bp upstream
Tssr94483	transcription start site region 94483	1199 bp upstream
Tssr94484	transcription start site region 94484	1311 bp upstream