rs6234040 SNP Detail

Summary

• ID
  rs6234040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13087921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCAGGGC TCCAATCAGA
  AGGCTGAGAT AAGCAGAAGG CCCATGGCCA CCTGGGGCCC AGGGTGAGTG AACCTTGCCC
  CATGCCTGTC ACAGCCACTG CCGTCCTTGA CCACACCATG GGGAGCCCGG TGCAACTCAG
  CCTGCTCTGT GTTGTCCTGG CCAGCCTCCT GCTCCCTGGG AAAGGTGGTA AGTACTCCAG
  Y
  CCTTCACGGT GAAGAGCGGC CCGGGGAGAG GGGGTGAGAG TGGGTGGGAG GGTGGGAGGG
  TGAAATGCTT GGTTCGCTGA CCAGCGACAG GCTGGCTTCT AAAGGTATAC ATAGAGCCAG
  CTGCGAGTAC CCATGCAGAG CACATGGAGA TTTGAATGAA AGGAAACGGA GAAAGGAGAG
  GAAGGGAATG GAGACAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8639768	WI_WGS_8_13024879	WI	MOUSE	f	SNP						T	C
ss47391401	NES11508725	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T			T	T	T		C	T	C	C		C
ss322503679	CHEV_8_13037921	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6234040					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47391401	NES11508725	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13087921 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	589 bp distal
Rr659844	regulatory region 659844	73 bp distal
Rr659845	regulatory region 659845	within coordinates
Tssr76325	transcription start site region 76325	618 bp downstream
Tssr76326	transcription start site region 76326	569 bp downstream
Tssr76327	transcription start site region 76327	559 bp downstream
Tssr76328	transcription start site region 76328	531 bp downstream
Tssr76329	transcription start site region 76329	83 bp downstream
Tssr76330	transcription start site region 76330	55 bp upstream
Tssr76331	transcription start site region 76331	1382 bp upstream
Tssr76332	transcription start site region 76332	1405 bp upstream
Tssr76333	transcription start site region 76333	1437 bp upstream
Tssr76334	transcription start site region 76334	1448 bp upstream
Tssr76335	transcription start site region 76335	1616 bp upstream