rs6234054 SNP Detail

Summary

• ID
  rs6234054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13087929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCAATCA GAAGGCTGAG
  ATAAGCAGAA GGCCCATGGC CACCTGGGGC CCAGGGTGAG TGAACCTTGC CCCATGCCTG
  TCACAGCCAC TGCCGTCCTT GACCACACCA TGGGGAGCCC GGTGCAACTC AGCCTGCTCT
  GTGTTGTCCT GGCCAGCCTC CTGCTCCCTG GGAAAGGTGG TAAGTACTCC AGTCCTTCAC
  R
  GTGAAGAGCG GCCCGGGGAG AGGGGGTGAG AGTGGGTGGG AGGGTGGGAG GGTGAAATGC
  TTGGTTCGCT GACCAGCGAC AGGCTGGCTT CTAAAGGTAT ACATAGAGCC AGCTGCGAGT
  ACCCATGCAG AGCACATGGA GATTTGAATG AAAGGAAACG GAGAAAGGAG AGGAAGGGAA
  TGGAGACAAA GTGAGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8639782	WI_WGS_8_13024887	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6234054					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13087929 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	597 bp distal
Rr659844	regulatory region 659844	81 bp distal
Rr659845	regulatory region 659845	within coordinates
Tssr76325	transcription start site region 76325	626 bp downstream
Tssr76326	transcription start site region 76326	577 bp downstream
Tssr76327	transcription start site region 76327	567 bp downstream
Tssr76328	transcription start site region 76328	539 bp downstream
Tssr76329	transcription start site region 76329	91 bp downstream
Tssr76330	transcription start site region 76330	47 bp upstream
Tssr76331	transcription start site region 76331	1374 bp upstream
Tssr76332	transcription start site region 76332	1397 bp upstream
Tssr76333	transcription start site region 76333	1429 bp upstream
Tssr76334	transcription start site region 76334	1440 bp upstream
Tssr76335	transcription start site region 76335	1608 bp upstream