rs6234534 SNP Detail

Summary

• ID
  rs6234534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:160606754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGAGATG ACTCCTTTTG
  GCTAGCAGGC CAGAGACAAG TAAAGAGGGA CCACTGAGTG TTACCAGTGA AAACACGTTA
  ACAAAAGAAG TCACTGCCTG TGACTTCAGG GGTATAGGAC TGAAATGCGG GATTAAAAGA
  CAGAAACATT TTGTGGCCTT TACTAAGAAA AATCACAAGT AGCTGTGCCC CTAACAGAGA
  R
  AGCTGGGGCC TCACTTGGGG CCAGACTCAC CCTGGACTTT AGCTGAGGAC AGGGACTAAA
  CAGTCACTTG TCTTTCAACT TATTCCTTAC CTCGACCATA TCAGATCTGC TGAGTGAGTG
  TGAGGTTACC CCACCAACTT AGTGACCAAA ACAAGCCCAG ACCTGCCTTA CATTTTAGTT
  AAGTGCATCT TTCCCTTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8640266	WI_WGS_2_161654030	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6234534					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160606754 () rs orientation: forward

Symbol	Name	Function Class
Plcg1	phospholipase C, gamma 1	Intron
Rr569070	regulatory region 569070	1447 bp proximal